Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs10861663 chr12:107183589 G/A 0.000113 133 46.77 45.1 28.8 KM Plot
TGCT rs10866526 chr5:1796312 T/G 4.04E-7 133 42.27 45.83 20.6 KM Plot
TGCT rs10934730 chr3:125631706 G/T 2.17E-5 132 51.32 35.37 52.43 KM Plot
TGCT rs10936731 chr3:172427426 G/A 1.65E-5 132 24.15 37.53 45.1 KM Plot
TGCT rs10954167 chr7:127788399 A/G 2.14E-9 133 43.68 37.1 12.55 KM Plot
TGCT rs10954168 chr7:127788550 T/C 2.55E-9 132 43.68 36.23 12.55 KM Plot
TGCT rs10955279 chr8:103090257 G/T 0.000114 133 42.1 40.6 48.45 KM Plot
TGCT rs10955760 chr8:116904089 A/G 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs10956950 chr8:96447146 G/A 1.64E-5 134 45.1 35.37 19.23 KM Plot
TGCT rs10985046 chr9:123584677 A/G 6.0E-5 134 43.68 29.33 64.45 KM Plot
TGCT rs11015628 chr10:27549292 C/T 9.52E-7 128 43.68 66.9 20.6 KM Plot
TGCT rs11024706 chr11:18562191 C/T 7.59E-5 134 46.77 36.1 12.68 KM Plot
TGCT rs1105414 chr1:42144764 C/T 0 134 42.18 25.33 0.57 KM Plot
TGCT rs11059904 chr12:129264972 C/T 2.16E-5 131 45.1 54.58 21.75 KM Plot
TGCT rs11059923 chr12:129293057 G/A 1.39E-5 134 41.33 44.28 29.53 KM Plot